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Kursteilnehmer-Bewertung und -Feedback für Whole genome sequencing of bacterial genomes - tools and applications von Technical University of Denmark (DTU)

4.6
314 Bewertungen
78 Bewertungen

Über den Kurs

This course will cover the topic of Whole genome sequencing (WGS) of bacterial genomes which is becoming more and more relevant for the medical sector. WGS technology and applications are high on international political agenda, as the classical methods are being replaced by WGS technology and therefore bioinformatic tools are extremely important for allowing the people working in this sector to be able to analyze the data and obtain results that can be interpreted and used for different purposes. The course will give the learners a basis to understand and be acquainted with WGS applications in surveillance of bacteria including species identification, typing and characterization of antimicrobial resistance and virulence traits as well as plasmid characterization. It will also give the opportunity to learners to learn about online tools and what they can be used for through demonstrations on how to use some of these tools and exercises to be solved by learners with use of freely available WGS analysis tools . By the end of this course you should be able to: 1. Describe the general Principles in typing of Bacteria 2. Give examples of the applications of Whole Genome Sequencing to Surveillance of bacterial pathogens and antimicrobial resistance 3. Apply genomic tools for sub-typing and surveillance 4. Define the concept of Next-Generation Sequencing and describe the sequencing data from NGS 5. Describe how to do de novo assembly from raw reads to contigs 6. Enumerate the methods behind the tools for species identification, MLST typing and resistance gene detection 7. Apply the tools for species identification, MLST typing and resistance gene detection in real cases of other bacterial and pathogen genomes. 8. Describe the methods behind the tools for Salmonella and E.coli typing, plasmid replicon detection and plasmid typing 9. Utilize the tools for Salmonella and E.coli typing, plasmid replicon detection and plasmid typing in real cases of other bacterial and pathogen genomes. 10. Explain the concept and be able to use the integrated bacterial analysis pipeline for batch analysis and typing of genomic data 11. Demonstrate how to construct phylogenetic tree based on SNPs 12. Apply the phylogenetic tool to construct phylogenetic trees and explain the relatedness of bacterial or pathogen strains 13. Describe how to create your own sequence database 14. Utilize the MyDbFinder tool to detect genetic markers of interest from whole genome sequencing...

Top-Bewertungen

MB

Jun 10, 2019

Excellent course with a wealth of information about tools and applications of whole genome sequencing. Presented in a very lucid and interesting manner, very crispy and simplified course.

XL

Jun 30, 2019

The course is using cutting-edge genome sequencing technology and the authentic software to showcasing the applications and tools of genome sequencing. It is a great chance to learn it.

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26 - 50 von 79 Bewertungen für Whole genome sequencing of bacterial genomes - tools and applications

von Bologa A M

Mar 25, 2018

very useful. thanks a lot.

von Ana V U B

Dec 17, 2017

I loved the course. I lerned how to use different tools to understant a DNA information, with a lot of practical exercises. I can wait the course of metagenomics.

von Kris s

Dec 08, 2017

Genuinly seems fun.

Keep it up Team at TUD

von Carlos H C

Nov 20, 2017

A clear and very didactic course on the tools that DTU offers to analyze genomes. Thanks for the classes!

von Valourstar M

Nov 15, 2017

developing skills in sequencing techniques

von 俞骅

Jul 05, 2018

简单明了,适合初学者和做细菌分型溯源的生物学家

von David M M

Apr 11, 2018

Learn the basics of WGS and how to use different tools for data analysis: species identification, plasmid search, resistance genes search, serotyping... All with a good structure and very well explained.

von Marc B F

May 02, 2018

The tools provided are very interesting and easy to use

von Moayad M A

Aug 21, 2017

very easy and interactive

von Rafael P

Jun 03, 2018

Great Course!, congratulations!

von Heba M M

Oct 14, 2017

Good course, with amazing hands-on practice. Thanks it was really helpful.

von sandeep K

May 18, 2018

The contents of the course were really very good and with loads of knowledge. Thank you very much for improving my knowledge in this area.

von Manikandan M

Oct 16, 2017

GOOD ONE TO GET KNOWLEDGE ABOUT WHOLE GENOME SEQUENCING AND BACTERIAL SUB TYPING

von Adithya A

May 23, 2018

EXCELLENT COURSE GOOD FOR ANY ONE WHO HAS A BASIC KNOWLEDGE ON GENETICS

von Opeyemi U L

Feb 02, 2018

The module was easy to follow and the class exercises made it very easy to understand. I will highly recommend this course to microbiology students especially the ones without prior knowledge of basic bioinformatics for epidemiological study of bacterial infections

von Mustafa R C

Jan 06, 2018

Very good, Thanks DTU

von Nimat U

Oct 20, 2018

Thank you very much to all the team of DTU for organizing this course and made it easy for every student/researcher to analyze genomic sequence data. This course was very helpful to me and I appreciate Dr. Shinny for her excellent teaching methodology.

von Josue D C C

Oct 03, 2018

Excelente curso, brinda una gran cantidad de herramientas muy útiles para realizar investigación.

von Luis E H F

Oct 28, 2018

It's a great course and it's not so difficult

von Ahmed E A e

Oct 31, 2018

It isa fantastic course to spend your time

von Mohamed E

Jul 28, 2018

Not to mention, the power of the tools illustrated in this course, I just wanna mention that I am senior student in bioinformatics bachelor degree and Dr. Pimlapas Leekitcharoenphon is by far the best instructor I have ever come across in the field till now. Thank you.

von MUTSHIENE D E

Mar 29, 2019

Great and very insightful course. It really shed light on many aspects on whole genome sequencing

von Mirza M V B

Jun 10, 2019

Excellent course with a wealth of information about tools and applications of whole genome sequencing. Presented in a very lucid and interesting manner, very crispy and simplified course.

von AKM F H

Jun 10, 2019

This is a really good course for beginners as it explained the use of some fantastic web-based tools to detect bacterial ST, resistance, plasmid, MLST, and phylogeny. I have learned a lot of new techniques to analyze the whole genome of a bacterium. Thank you for giving me the opportunity.

von Syed H A

Jun 12, 2019

The Design, of course, is best as per researcher requirement.